The Allergen Free Kitchen

menu icon
go to homepage
  • Recipes
  • Meal Plans
  • About Us
    • FAQ
  • Resources
  • Subscribe

subscribe
search icon
Homepage link
  • Recipes
  • Meal Plans
  • About Us
    • FAQ
  • Resources
  • Subscribe

×
Home » Recipes » Muffins

Allergen Friendly Double Chocolate Muffins- Vegan, GF/DF, Top 9 Free

Published: Mar 13, 2022 · Updated: Jun 30, 2024 by Katherine Evans · This post may contain affiliate links · Leave a Comment

↓ Jump to Recipe
Pin the Recipe
Colourful circles with letters denoting which allergens this recipe is free from.

Allergen Friendly Double Chocolate Muffins are free from top allergens and gluten free but not free of taste. Moist and delicious these muffins are a favourite to make for groups so everyone can enjoy them, despite food restrictions.

Allergen Friendly double Chocolate muffins in a dark grey muffin tin.
Jump to:
  • The Quick Lowdown:
  • Ingredients
  • Notes on Ingredients
  • Instructions
  • Substitutions
  • Variations
  • Equipment
  • Storage
  • Top tip
  • Other Recipes You May Enjoy
  • 📖 Recipe
  • Food safety
  • Latest Recipes
  • 💬 Comments

These dairy free double chocolate muffins are one of our favourites. Born out of the kids' love for anything chocolate. The recipe came about from two main parts.

The first was the request of our EoE child asking for chocolate muffins like their friends at school. How could we refuse? We set off to experiment on our traditional muffins I had been baking for years and came up with the adaptations that are now our standard chocolate muffins.

The Quick Lowdown:

Flavour/Taste: Chocolate, Chocolate, and more Chocolate, but not overly sweet or rich.

Texture: Light and fluffy that makes it a hit with even those who aren't gluten free.

Speed: A super quick recipe to whip up.

Difficulty: A Beginner level recipe, great for those starting to bake allery friendly!

Double Chocolate Muffins on a piece of white parchment paper on a black cooling rack

Convincing the Kids to Try Allergen Friendly

The second drive in this recipe was one of our kids was struggling with the idea of giving up the foods we used to eat with some of the restrictions we needed to follow. It was a pretty drastic cut for us. We found out about the allergies and need to make the changes asap but this one child wasn't happy with the changes. They were convinced that nothing could taste good that was not the food we used to have.

We made the muffins, tweaked the recipe, made them again, and more fine tuning until we came up with this recipe. When we served them to the kids they got them individually and the child least happy with the food changes thought these were the original recipe muffins! They were so happy to tell me how good the old food is. That is when I mentioned these aren't the old recipe, they are safe for all of us and foolw our food restrictions.

They were shocked at first but after another bite they decided the new foods weren't so bad after all. It was in that moment I really felt --We did it! This isn't going to be as bad or as hard as I thought. don't get me wrong. There are still tough days, there are still long days where everything needs to be made from scratch but we lived in that moment. The perfect double chocolate muffin moment. The moment we won all the kids over to the new way of eating for us. We made food restrictions fun and tasty again.

That is what the allergen friendly double chocolate muffins means to us.

double chocolate muffins ingredients

Ingredients

The double chocolate muffins use top 8 allergen free ingredients.

  • Gluten Free Flour
  • Cocoa powder
  • Granulated, Organic Sugar
  • Baking powder, Gluten Free
  • Baking soda
  • Salt
  • Apple sauce
  • Coconut oil
  • Oat milk, Gluten Free
  • Apple cider vinegar
  • Safe Neutral oil, we use canola 
  • Vanilla extract 
  • Mini chocolate vegan chips
  • Chocolate chunks

See recipe card for quantities.

Notes on Ingredients

Make sure to check your cocoa powder, baking soda, baking powder, and oat milk are gluten free.

Finding vegan and free from top allergens chocolate chips can be difficult in Canada. We like the Enjoy Life Foods Chocolate Chunks and Chocolate Mini Chips. There are quite a few different brands in the United States, Walmart makes a line in their store brand that is safe for some with allergies. Always check the labels and with the manufacturer to make sure they are suitable for you.

double chocolate muffins on a blue plate and one ripped in half in the fore ground with a glass of milk in the backeground

Instructions

Toss the chocolate chips and chunks in 2 Tbsps flour. Mix oat milk and apple cider vinegar to form a vegan buttermilk.Melt the coconut oil so it mixes properly. 

In a large bowl, sift all the dry ingredients together and mix. Make a well in the middle of the mix.  

In a separate medium bowl whisk all the wet ingredients together, including buttermilk and melted coconut oil. Pour the wet ingredients into the well in the dry ingredients. Mix until combined. Do not over mix. 

Add in the chocolate chips and chunks. Just the chips and chunks, not the extra flour they were tossed in, reserved 2 chunks for each muffin. 

Preheat the oven to 425° F. Do it here if it takes 5-10 mins to preheat your oven as you want the batter to rest in the bowl. 

double chocolate muffins stacked three high on a blue plate. chocolate chips and cunks aoo around it on a piece of parchment paper. a glass of milk in the back left and in the back right a muffin on an upside down wine glass.

Fill greased muffin tins with 1 scoop of batter (we used a medium scoop and get the right amount for our tins and yield 18-20 muffins)Pop the muffins in the oven at 425°F for 2 mins then lower the heat to 350°F for 15 mins or when the skewer comes out mostly clean not totally as they will be overdone and dry. 

Let muffins cool in the tins for 10 mins on a rack then turn out and let cool all the way on a wire rack.

Combine all spices into a large bowl and mix thoroughly into lean ground beef.

Hint: Using very ripe to over ripe bananas works best in this recipe to help bind the mix.

Substitutions

Oat Milk

If you cannot use oat milk or like me it is getting harder and harder to find gluten free oat milk, other kinds of plant milk can be used. We often use rice milk in place of oat in baking without any issues.

Apple Sauce

If apple sauce is not a safe food for you it can be replaced with ½ a banana for each ¼ C of apple sauce. The substitution will give the muffins a banana taste but less so than in non chocolate baked goods.

Coconut oil

Many people cannot have coconut products in addition to the top 8 allergens. In Canada it is not classified as a tree nut, so we do tend to use coconut as an ingredient and are still top 8 free. In place of coconut oil here a neutral oil like canola or rapeseed can be used, if it is safe for you. We do not recommend vegetable oil as most of the ones we have found contain soybean oil.

Variations

Double Chocolate Muffins on a table and in a ceramic muffin tin. A glass of milk sits to the right.

Mint

Around the holidays we add mint extract to the batter to flavour the muffins for a festive taste that goes well with a hot chocolate.Other flavourings can be used to reflect the different times of year.

Dried Fruit

Cherry flavouring added and dried cherries in place of the chocolate chunks will give a nice black forest flavoured muffin. Other dried fruits like blueberries, cranberries, or a chunks of fresh bananas to top instead of chocolate chunks are a a great way to jazz the muffins for different occasions.

Flavourings

We like to use the Lorann flavouring oils, which are safe for us. It is always best to check with the manufacturer if they are safe for you as they do contain natural flavours.

The amount of flavouring to get a hint of the flavouring required will vary from product to product as some need only a few drops and others need a full teaspoon. If using less than the vanilla in the recipe and omitting the vanilla add the flavouring to safe oat or rice milk to make up the quantity of vanilla replaced.

Equipment

For Mixing

The easiest way to make the Allergen Friendly Double Chocolate Muffins is to use a stand mixer. I often prefer to use it just for the ease of it. I can have it do all the work, walk away and save my energy for other things I need to do. It also makes it easy for the kids to make the muffins on their own. You don't need a stand mixer though. A hand mixer , or a spoon and bowl work well here too. They just take a bit more elbow grease, like a kitchen workout.

For Baking

Double Chocolate Muffins on a table and in a ceramic muffin tin. A glass of milk sits to the right.

We use non stick dark metal pans for our baked goods for the most part. They are what the baking times are based on. If you use shiny metal pans watch the bake closely as the gluten free double chocolate muffins will bake quicker in them.

Ceramic and stonewear baking tins take a bit longer to heat and I recommend lining them with cupcake liners if you are using one for these gluten free double chocolate muffins. The gluten free bakes tend to stick in them. We do not recommend using ceramic and stone bake wear that has been used for non allergen baking. they can retain the allergens in hard to clean spots.

We have pans we got specifically for our allergen free baking.

Storage

Store the allergen friendly double chocolate muffins in a well sealed container with a piece of paper towel. If storing the muffins in the fridge or freezer let come up to room temperature or thaw before eating for the best taste. Always let baked goods fully cool before storing to avoid extra moisture in the container. Extra moisture will shorten the shelf life of the muffins and promote mould to grow.

Counter

Store dairy free double chocolate muffins for up to 3 days on the counter in a sealed container. If moisture develops wipe it all up and store in the fridge instead.

Fridge

Store for up to one week in a sealed container in the fridge. This is our preferred and recommended method of storage for safety reasons.

Freezer

Wrapped ensure the dairy free double chocolate muffins in an extra layer of plastic wrap, to store in a freezer.

Top tip

Double Chocolate Muffins on a piece of white parchment paper on a black cooling rack

We like to say that gluten free baking requires pampering.

What we mean is... Let the batter rest in the cooking pan for 10 mins before baking. Do this to reduce the gritty texture of some rice based flours. Before popping the gluten free double chocolate muffins let them cool in the pans for 10 mins to firm up. Removing gluten free bakes too early from their baking tin can risk them breaking apart. Letting them cool a bit and then putting the muffins on the cooling racks will allow them to firm and hold their structure.

Other Recipes You May Enjoy

Raspberry Rhubarb Muffins

Allergen Friendly Chocolate Cake

Soft Vegan Chocolate Cookies

📖 Recipe

Allergen Friendly double Chocolate muffins in a dark grey muffin tin.

Allergen Friendly Double Chocolate Muffins- Vegan, GF/DF, Top 8 Free

Print Recipe Pin Recipe Add to Collection Go to Collections Add to Shopping ListGo to Shopping List
Prep Time: 20 minutes minutes
Cook Time: 17 minutes minutes
Total Time: 37 minutes minutes
Servings: 18 Muffins
Calories: 189kcal
Author: Katherine Evans - The Allergen Free Kitchen
Allergen Friendly Double Chocolate Muffins are free from top allergens and gluten free but not free of taste. Moist and delicious these muffins are a favourite to make for groups so everyone can enjoy them, despite food restrictions.

Ingredients

  • 1 ¼ Cups Oat Milk gluten free or other vegan milk
  • 2 Tablespoon and ¼ teaspoon Apple Cider Vinegar
  • 2 Cups Gluten Free Flour Cup for Cup with xanthan gum, (see notes)
  • ¾ Cups Cocoa Powder gluten free
  • 1 ¼ Cups Granulated Sugar
  • 2 ½ teaspoon Baking Powder
  • ½ teaspoon Baking Soda
  • ½ teaspoon Sea Salt
  • ½ Cups Apple Sauce
  • ¼ Cups Coconut Oil melted
  • 1 teaspoon Safe Neutral Oil we use canola
  • 1 teaspoon Vanilla Extract
  • ½ Cups Mini Chocolate Vegan Chips See notes
  • ½ Cups Chocolate Chunks plus 40 chunks for topping

Instructions

  • Mix oat milk and apple cider vinegar to form a vegan buttermilk. Set aside for 5 mins.
  • Melt the coconut oil so it mixes properly. Set aside. 
  • In a large bowl, sift all the dry ingredients (Gluten Free Flour, Cocoa Powder, Baking Soda, Baking Powder, and Salt) together and mix. Make a well in the middle of the mix. Set aside. *Keep 2 Tbsps of gluten free flour to coat the chocolate chips and chunks.
  • In a separate medium bowl whisk all the wet ingredients together,Oat milk with Apple cider vinegar, Melted coconut oil, Granulated sugar, Apple sauce, Vanilla extract, and Neutral oil.
  • Pour the wet ingredients, into the well in the dry ingredients you had set aside. 
  • Mix until combined. Do not over mix. 
  • Toss the chocolate chips and chunks in 2 Tbsps flour. 
  • Add in the chocolate chips and chunks. Just the chips and chunks, not the extra flour they were tossed in, keep 2 chunks for each muffin. 
  • Preheat the oven to 425° F. Do it here if it takes 5-10 mins to preheat your oven as you want the batter to rest in the bowl. 
  • Fill greased muffin tins with 1 scoop of batter (we used a medium scoop and get the right amount for our tins and yield 18-20 muffins)
  • Pop the muffins in the oven at 425°F for 2 mins then lower the heat to 350°F for 15 mins or when the skewer comes out mostly clean not totally as they will be overdone and dry. 
  • Let muffins cool in the tins for 10 mins on a rack then turn out and let cool all the way on a wire rack.

Notes

Gluten Free Flour that we use is the kind with xanthan gum. Robin Hood Gluten Free, Bob's Red mill 1 to 1 in the light blue bag are what we use.
We use Enjoy Life Chocolate Chips and Chunck as they are safe for us. Double check they are safe for you.
Toss the Chocolate Chunks in 2 tbsps gf flour so they don’t sink when baking.
Letting the batter rest will helps to avoid the grittiness of GF flour when baked. You can preheat earlier and just let the dough rest though.
Instead of the chocolate chunks you can add ½ Cup safe vegan small marshmallows into the batter. We like to make our own marshmallows.
½ Cup mashed bananas or pureed fresh blueberries work well instead of apple sauce. With the blueberries they may be less sweeet so 1-2 Tbsps of maple sugar can be added to the blueberry puree.
Double check that all ingredients are gluten free before buying.
If coconut oil is not safe for you another oil neutral in flavour can be swapped out. Our favourite substitutions would be Canola or Avocado oil, if they are safe for you.

Allergy Note 1

Always check that each ingredient is safe for you. Reading all the ingredients and labelling as well as checking with the manufacturer should always be done before buying any product. Each person's allergies are different and only you and your medical team can determine what is best for you. Checking with the manufacturer is best practice to see if shared lines, or facilities are used when making any of the suggested products. Just because a product is right for us does not mean it is safe for anyone else. You must do your own research on each product.

Allergy Note 2

If making this recipe for anyone with an allergy always check with them for suitable products and ingredients. Each person knows their allergies best and can advise on what is safe for them to eat. Keep in mind that if making for another person they may not be able to eat it with shared prep surfaces, cooking equipment, and kitchens or other safety reasons.

Allergy Note 3

This is not medical advice. Always discuss your allergies, nutrition, and suitable products and recipes with your medical team before using.

Nutrition

Serving: 1muffin | Calories: 189kcal | Carbohydrates: 32g | Protein: 2.5g | Fat: 5.9g | Saturated Fat: 3.8g | Polyunsaturated Fat: 1.3g | Cholesterol: 1mg | Sodium: 150mg | Fiber: 1.5g | Sugar: 19g

Nutritional Disclaimer

"The Allergen Free Kitchen" is not a registered dietician or nutritionist, does not replace a registered dietician or nutritionist and any nutritional information shared is an estimate. If calorie count and other nutritional values are important to you, we recommend you consult with your medical team to find a registered dietician or nutritionist and for you to calculate the nutritional information. Calories and nutritional values can vary vastly depending on which brands were used and any substitutions used.

Tried this recipe?We'd love if you'd Leave a Review!

Food safety

  • Always use proper heat protective oven mitts or gloves when touching hot pans
  • Do not use the same utensils on allergen friendly foods as ones that have touched allergens
  • Never eat raw flour or uncooked batter containing raw flour
  • Never leave cooking food unattended
  • Let the muffins cool as the chocolate chinks may cause burns if handled when hot
  • Always have good ventilation when using a gas stove

See more guidelines at USDA.gov.

Latest Recipes

  • Allergy Friendly Slow Cooker Pot Roast
  • Mediterranean Quinoa Salad
  • German Cucumber Salad Recipe
  • Corn and Tomato Salad
  • 27 Allergy Friendly Mother's Day Brunch Recipes

More Muffin Recipes

  • Four pictures of the recipes included. Top left are chocolate muffins in a tin, top right is a stack of Funfetti Pancakes, bottom left is a white plate with french toast and berries, and bottom right is a mug that says "best mom (ever)".
    27 Allergy Friendly Mother's Day Brunch Recipes
  • A close up of a strawberry vanilla muffin on its side on a marble counter top. There is a second upright muffin in a red cupcake liner with white polka dots next to it.
    Allergen Friendly Strawberry Vanilla Muffins - GF/DF, Vegan, Top 9 Free
  • Rhubarb Raspberry Muffins
    Rhubarb Raspberry Muffins--Vegan, GF/DF/EF, Top 8 Free

Comments

No Comments

5 from 2 votes (2 ratings without comment)

Let us know how much you loved this recipe! Please leave a comment. Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




We're Katherine and Rob!

The passionate creators behind The Allergen Free Kitchen, your go-to destination for allergy-friendly recipes that are as delicious as they are free from the top 9 allergens. With a deep commitment to our own children's food allergies, We embarked on a journey to develop and share scrumptious meals that cater to various dietary needs.

More about Us

Popular

  • A white platter with a whole pot roast in the centre surrounded by cooked potatoes, carrots, and onions.
    Allergy Friendly Slow Cooker Pot Roast
  • A close up of half of a Mediterranean quinoa salad in a white bowl.
    Mediterranean Quinoa Salad
  • A bowl of sliced cucumber dill salad.
    German Cucumber Salad Recipe
  • Corn and tomato salad in a beige bowl.
    Corn and Tomato Salad

Don't miss out new recipes

Subscribe

Sign up for the NEWSLETTER!

Seasonal

  • Mexican vegan rice in a white bowl with tomatoes on a plate to the left behind and a skillet with fried rice behind and to the left.
    Vegan Mexican Rice 
  • vegan rice pudding topped with raspberried in crystal glasses on a silver tray.
    Vegan Rice Pudding
  • Oven roasted broccoli close up on a white plate.
    Gluten Free Roasted Broccoli
  • Honey garlic chicken and rice in a white bowl.
    Allergy Friendly Honey Garlic Chicken 

Footer

↑ back to top

About

  • Privacy Policy
  • Disclaimer
  • Terms & Conditions
  • Cookie Policy and Consent Tool
  • Accessibility Policy

Newsletter

  • Sign Up! for emails, meal plans, and new recipes.

Contact

  • Contact
  • FAQ
  • About Us

*DISCLAIMER: THIS WEBSITE MAKES USE OF SPONSORED AND/OR AFFILIATE LINKS. THE ALLERGEN FREE KITCHEN INC. IS A PARTICIPANT IN THE AMAZON SERVICES LLC ASSOCIATES PROGRAM AND EQUALEATS AFFILIATE PROGRAM AND MAY EARN FROM QUALIFYING PURCHASES.*

Copyright ©2021-2026 TheAllergenFreeKitchen.com and The Allergen Free Kitchen Inc. All Rights Reserved. Recipes, blog posts, articles, and images are copy protected. Please contact us if you wish to reproduce, or re-print photos or recipes/blog/articles.

Rate This Recipe

Your vote:




Let us know what you thought of this recipe:

This worked exactly as written, thanks!
My family loved this!
Thank you for sharing this recipe

Or write in your own words:

A rating is required
A name is required
An email is required

Recipe Ratings without Comment

Something went wrong. Please try again.